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Sequence similarity networks visualize relationships

Claim that sequence similarity networks enable or support visualization and exploration of relationships across protein superfamilies.

Confidence
80%
active

Evidence Quote

“Sequence similarity networks visualize protein family relationships”

Relationship

sequence similarity networks enables sequence function space

Arguments

TM-score (structural similarity)subject
TM-score (structural similarity)object

Connections (3)

Reasoning on protein annotation and classification resourcesInferenceChain
Structural similarity often diverges from sequence similarityAssociation
Methodological tools facilitate protein function and structure analysisInferenceChain

Evidence

“Reference for sequence similarity networks in protein superfamily relationship visualization.”

Atkinson HJ et al. (2009). Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies doi:10.1371/journal.pone.0004345 ↗

“Reference on using sequence similarity networks to explore protein sequence-function space.”

Copp JN et al. (2018). Revealing Unexplored Sequence-Function Space Using Sequence Similarity Networks doi:10.1021/acs.biochem.8b00473 ↗