Fylo›NASA›Graph
Hubs
Association·nasa

Spaceflight induces differential gene expression vs ground

Claim that spaceflight plants differentially express genes compared to ground controls, as measured in root tips across genotypes.

Confidence
100%
active

Evidence Quote

“Plants in spaceflight differentially express genes compared to their ground controls”

Relationship

differential expression spaceflight differential expression Ground control in ISSES chamber

Arguments

Spaceflight transcriptome responsesubject
Ground control in ISSES chamberobject

Connections (2)

Spaceflight adaptation and dispensable transcriptome responsesInferenceChain
Spaceflight alters plant gene expressionAssociation

Evidence

“Reference for Arabidopsis gene expression patterns being altered during spaceflight.”

Paul A-L et al. (2005). Arabidopsis gene expression patterns are altered during spaceflight

“Reference for proteomics and transcriptomics analysis of Arabidopsis seedlings in microgravity.”

Proteomics and Transcriptomics Analysis of Arabidopsis Seedlings in Microgravity

“Reference for comparison of the spaceflight transcriptome among four Arabidopsis thaliana ecotypes.”

Comparison of the spaceflight transcriptome of four commonly used Arabidopsis thaliana ecotypes

“Reference for a review of molecular changes in plant gravitropism using omics techniques.”

Schuler O et al. (2015). A Bird’s-Eye View of Molecular Changes in Plant Gravitropism Using Omics Techniques doi:10.3389/fpls.2015.01176 ↗

“Reference for spaceflight-induced remodeling of plant growth strategies.”

Paul A-L et al. (2012). Plant growth strategies are remodeled by spaceflight doi:10.1186/1471-2229-12-232 ↗

“Reference for STAR, an ultrafast universal RNA-seq aligner.”

Dobin A et al. (2013). STAR: ultrafast universal RNA-seq aligner doi:10.1093/bioinformatics/bts635 ↗

“Reference for TopHat and Cufflinks, tools for differential gene and transcript expression analysis of RNA-seq experiments.”

Trapnell C et al. (2012). Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks doi:10.1038/nprot.2012.016 ↗

“Reference for ATTED-II, a plant coexpression database towards lineage-specific coexpression.”

Aoki Y et al. (2016). ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression doi:10.1093/pcp/pcv165 ↗