Association·arcadia

Transcriptome-based protein database enables detection of longer protein sequences

Claim that transcriptome-based protein database enables detection of longer protein sequences compared to prior databases.

Confidence
70%
active

Evidence Quote

“New database favored detection of longer protein sequences”

Relationship

Reference protein database enables Longer protein sequences detected

Arguments

Reference protein databasesubject
Longer protein sequences detectedobject

Connections (2)

Transcriptome-enabled proteomics for non-model organismsInferenceChain
Structural similarity often diverges from sequence similarityAssociation

Evidence

“Reference for CD-HIT clustering and comparison of large sets of sequences.”

Li W & Godzik A (2006). Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences doi:10.1093/bioinformatics/btl158 ↗

“Reference for CD-HIT acceleration for clustering next-generation sequencing data.”

Fu L et al. (2012). CD-HIT: accelerated for clustering the next-generation sequencing data doi:10.1093/bioinformatics/bts565 ↗

“Reference for InterProScan 5 tool for genome-scale protein function classification.”

Jones P et al. (2014). InterProScan 5: genome-scale protein function classification doi:10.1093/bioinformatics/btu031 ↗