Reasoning behind HGT event detection and validation in ticks and venomous species | ARCADIA FyloGraph | FyloGraph

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Reasoning behind HGT event detection and validation in ticks and venomous species

Explains how sequence- and structure-based analyses, along with contaminant filtering and genomic context validation, underpin the identification of horizontally transferred viral capsid genes in ticks and other venomous species.

Confidence

80%

◑partialactivecomplexity: mid

Reasoning Steps (2)

Alien index calculation and contaminant removalStep 1

Structural clustering and salivary expression analysisStep 2

Knowledge Gaps (1)

Lack of ovary transcriptome data for parasitoid wasps

Source

Synthesis for current paper

Connections (5)

Alien index predicts HGT eventsAssociation

Putative endogenized viral capsid proteins in ticks from HGTAssociation

Capsid HMM sequence enables detection of putative viral capsidsAssociation

Bracovirus capsid HMM detects capsid in Microplitis demolitorAssociation

Gag-Pol LTR retrotransposon protein has homologs in ticksAssociation