Association·arcadia
Capsid HMM sequence enables detection of putative viral capsids
Use of viral capsid-specific HMM profiles enables the detection of capsid-like sequences among venomous species transcriptomes.
Confidence
85%
active
Evidence Quote
“Capsid HMM search generates hits to putative viral capsids.”
Relationship
Capsid HMM sequence hit enables Viral capsid protein
Connections (4)
Reasoning behind HGT event detection and validation in ticks and venomous speciesInferenceChain
Petabase-scale sequence alignment increases viral discoveryAssociation
Inference chain: Methodological rationale for HGT and viral capsid detectionInferenceChain
Structure prediction and comparison tools underpin protein functional classificationInferenceChain
Evidence
“Reference to Finn et al. (2011) HMMER web server for sequence similarity searching”
Finn RD et al. (2011). HMMER web server: interactive sequence similarity searching doi:10.1093/nar/gkr367 ↗
“Reference to Reiter (2024) on clustering the NCBI nr database for efficient BLAST searches”
Reiter T (2024). Clustering the NCBI nr database to reduce database size and enable faster BLAST searches doi:10.57844/ARCADIA-W8XT-PC81 ↗
“Sykes J, Holland BR, Charleston MA. (2022). Review on protein fold network visualisations.”
Sykes J et al. (2022). A review of visualisations of protein fold networks and their relationship with sequence and function. doi:10.1111/brv.12905 ↗