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Protein databases facilitate knowledge integration — ARCADIA Knowledge Graph

Association·arcadia

Protein databases facilitate knowledge integration

Claim that protein data resources such as UniProt, CATH, and SCOPe support integration and interpretation of protein sequence and structure information.

Confidence
70%
active

Evidence Quote

“Databases such as UniProt, CATH, SCOPe combine protein sequence and structure information”

Relationship

uniprot protein knowledgebase facilitates CATH database

Arguments

TM-score (structural similarity)subject
TM-score (structural similarity)object

Connections (2)

Structure classification databases enable global mapping of protein structure spaceInferenceChain
SMN1 protein mutation causes SMAAssociation

Evidence

“Reference for InterProScan 5, a tool for genome-scale protein functional annotation.”

Jones P et al. (2014). InterProScan 5: genome-scale protein function classification doi:10.1093/bioinformatics/btu031 ↗

“Reference for CD-HIT, a software tool for clustering protein or nucleotide sequences.”

Li W & Godzik A (2006). Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences doi:10.1093/bioinformatics/btl158 ↗

“Citation for TM-align algorithm for protein structure alignment”

Zhang Y. (2005). TM-align: a protein structure alignment algorithm based on the TM-score doi:10.1093/nar/gki524 ↗