Association·arcadia

Protein databases facilitate knowledge integration

Claim that protein data resources such as UniProt, CATH, and SCOPe support integration and interpretation of protein sequence and structure information.

Confidence
70%
active

Evidence Quote

Databases such as UniProt, CATH, SCOPe combine protein sequence and structure information

Relationship

uniprot protein knowledgebase facilitates CATH database

Evidence

Reference for InterProScan 5, a tool for genome-scale protein functional annotation.

Jones P et al. (2014). InterProScan 5: genome-scale protein function classification doi:10.1093/bioinformatics/btu031

Reference for CD-HIT, a software tool for clustering protein or nucleotide sequences.

Li W & Godzik A (2006). Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences doi:10.1093/bioinformatics/btl158

Citation for TM-align algorithm for protein structure alignment

Zhang Y. (2005). TM-align: a protein structure alignment algorithm based on the TM-score doi:10.1093/nar/gki524