Factor·arcadia
Horizontal gene transfer screening methods
Parametric and phylogenetic (implicit and explicit) computational approaches (e.g., composition scans, BLAST-based searches, pangenome inference) used to identify candidate HGT events.
Confidence
100%
active
Source
Adair L. Borges et al. (2023). PreHGT: A scalable workflow that screens for horizontal gene transfer within and between kingdoms doi:10.57844/arcadia-jfbp-7p11 ↗
Connections (14)
preHGT pipeline combines multiple HGT screening algorithmsAssociation
DarkHorse method predicts HGT eventsAssociation
GeneMates detects HGT gene co-transferAssociation
HGT from bacteria/plants to AMF occursAssociation
HGT tools and databases advance HGT detection and analysisAssociation
RANGER-DTL 2.0 reconstructs gene-family evolutionAssociation
Recent HGT strategy detects HGT in RhizobiumAssociation
RIATA-HGT reconstructs HGT eventsAssociation
Information bottleneck approach detects recombinationAssociation
ShadowCaster detects HGT in prokaryotesAssociation
SigHunt detects HGT in eukaryotesAssociation
Score-based HMM predicts genomic islandsAssociation
TF-IDF method detects HGTAssociation
PreHGT enables HGT screeningAssociation