HGT tools and databases advance HGT detection and analysis
Claim that recent bioinformatics tools and databases, such as GIPSy, HGT-DB, HGT-Finder, HGTector, HGTphyloDetect, HGTree, and Islander, enhance the detection and analysis of horizontal gene transfer events.
Evidence Quote
“Tools and databases such as GIPSy, HGT-DB, HGT-Finder, HGTector, HGTphyloDetect, HGTree, and Islander advance horizontal gene transfer detection and analysis”
Relationship
Connections (2)
Evidence
“DOI reference to GIPSy software for genomic island prediction”
“DOI reference to HGT-DB database for prokaryotic HGT genes”
“DOI reference to HGT-Finder tool for HGT detection”
“DOI reference to HGTector tool for genome-wide HGT discovery”
“DOI reference to HGTphyloDetect tool for phylogenetic HGT analysis”
“DOI reference to HGTree v2.0 for HGT events via tree-reconciliation”
“DOI reference to Islander database for mapped genomic islands”
“Evidence summarizing that IslandHunter is a Java-based tool for detecting genomic islands in genomes.”
“Evidence summarizing that IslandPath-DIMOB is used to improve predictions of genomic islands in genomes.”
“Evidence summarizing that IslandViewer 4 is a tool for expanded prediction of genomic islands in large-scale datasets.”
“Evidence summarizing evaluation of different genomic island prediction tools using a comparative genomics approach.”
“Evidence summarizing that RANGER-DTL 2.0 enables rigorous reconstruction of gene-family evolution including horizontal gene transfer events.”
“Evidence summarizing that PGAP-X is an extension on the pan-genome analysis pipeline, supporting HGT analysis.”
“Evidence line summarizing the application of ShadowCaster, a compositional method integrating phylogenetic models to detect horizontal gene transfer (HGT) in prokaryotes.”
“Evidence line summarizing that SigHunt is a tool optimized for detecting horizontal gene transfer (HGT) in eukaryotic genomes.”
“Evidence line summarizing that RIATA-HGT provides a fast and accurate heuristic for reconstructing horizontal gene transfer events.”
“Evidence line summarizing the use of the information bottleneck approach to analyze and interpret recombination and horizontal gene transfer events.”
“Evidence line summarizing a novel strategy for detecting recent horizontal gene transfer applied to Rhizobium strains.”