Fylo›ARCADIA›Graph
Hubs
Association·arcadia

High-content phenotypes can inform evolutionary inference

General claim that measurements capturing complex biophysical, chemical, or molecular processes (such as Raman spectra, chlorophyll fluorescence, lifetime imaging) provide information about phylogenetic and evolutionary context of biological samples.

Confidence
70%
active

Evidence Quote

“High-dimensional phenotypes can be combined with evolutionary inference to dissect complex biology.”

Relationship

High-content phenotype informs Evolutionary inference

Arguments

High-content phenotypesubject
Evolutionary inferenceobject

Connections (2)

Structural similarity often diverges from sequence similarityAssociation
Reasoning: Chlorophyll fluorescence methods inform phylogenetic contextInferenceChain

Evidence

“Evidence summarizing Cheng & Xie (2015) on the emergence of vibrational spectroscopic imaging of living systems (including Raman microscopy) as an important platform for biology and medicine.”

Cheng J-X & Xie XS (2015). Vibrational spectroscopic imaging of living systems: An emerging platform for biology and medicine doi:10.1126/science.aaa8870 ↗

“Evidence that Raman2RNA enables label-free prediction of single-cell RNA expression profiles from Raman microscopy as shown by Kobayashi-Kirschvink et al. (2021).”

Kobayashi-Kirschvink KJ et al. (2021). Raman2RNA: Live-cell label-free prediction of single-cell RNA expression profiles by Raman microscopy doi:10.1101/2021.11.30.470655 ↗

“Evidence that linear regression can link single-cell transcriptomic data and cellular Raman spectra, as demonstrated by Kobayashi-Kirschvink et al. (2018).”

Kobayashi-Kirschvink KJ et al. (2018). Linear Regression Links Transcriptomic Data and Cellular Raman Spectra doi:10.1016/j.cels.2018.05.015 ↗

“Evidence summarizing the potential and applications of Raman spectroscopy as a tool for ecology and evolution, as discussed by Germond et al. (2017).”

Germond A et al. (2017). Raman spectroscopy as a tool for ecology and evolution doi:10.1098/rsif.2017.0174 ↗

“Evidence summarizing the 2013 guidance and new applications for chlorophyll fluorescence analysis as discussed in the referenced study.”

(2013). Chlorophyll fluorescence analysis: a guide to good practice and understanding some new applications doi:10.1093/jxb/ert208 ↗