de Bruijn graph compaction reduces memory usage — ARCADIA Knowledge Graph

Association·arcadia

de Bruijn graph compaction reduces memory usage

Claim that graph compaction approaches reduce memory needed for sequence assembly.

Confidence
70%
active

Evidence Quote

“Compacting de Bruijn graphs reduces memory usage in assembly”

Relationship

de Bruijn graph compaction reduces Memory usage in sequence assembly

Arguments

de Bruijn graph compactionsubject
Memory usage in sequence assemblyobject

Connections (2)

Metagenome analysis tools enable large-scale assembly and discoveryInferenceChain
de Bruijn graph compaction reduces memory usageAssociation

Evidence

“Reference to 2016 publication on efficient de Bruijn graph compaction for sequencing”

Chikhi R et al. (2016). Compacting de Bruijn graphs from sequencing data quickly and in low memory doi:10.1093/bioinformatics/btw279 ↗