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BLAST-based HGT indices identify candidates — ARCADIA Knowledge Graph

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BLAST-based HGT indices identify candidates

Algorithms such as Alien index, HGT score, and Donor distribution index applied to BLAST results predict HGT candidates.

Confidence
80%
active

Evidence Quote

“BLAST-based HGT indices identify candidate horizontally transferred genes”

Relationship

BLAST-based HGT indices identifies Horizontal gene transfer (HGT)

Arguments

BLAST-based HGT indicessubject
Horizontal gene transfer (HGT)object

Connections (1)

Plutella xylostella may acquire N protein via parasite-to-host HGTAssociation

Evidence

“Evidence line summarizing that the Alienness software enables rapid detection of candidate horizontal gene transfers across the tree of life, as reported by Rancurel et al. (2017).”

Rancurel C et al. (2017). Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life doi:10.3390/genes8100248 ↗

“Evidence line summarizing that the DarkHorse method predicts horizontal gene transfer genome-wide, as described by Podell and Gaasterland (2007).”

Podell S & Gaasterland T (2007). DarkHorse: a method for genome-wide prediction of horizontal gene transfer doi:10.1186/gb-2007-8-2-r16 ↗

“Evidence line summarizing that the GeneMates R package detects horizontal gene co-transfer between bacteria using association analysis controlled for population structure, as described by Wan et al. (2020).”

Wan Y et al. (2020). GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure doi:10.1186/s12864-020-07019-6 ↗

“Evidence summarizing that HGTector is an automated method facilitating genome-wide discovery of putative horizontal gene transfers.”

HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers. https://doi.org/10.1186/1471-2164-15-717