Factor·arcadia
AlphaFold database (AFDB)
A large database of protein structural predictions used for training and analysis in protein modeling research.
Confidence
100%
active
Source
Prachee Avasthi et al. (2024). How phylogenetic bias shapes protein databases and models doi:10.57844/arcadia-570f-5cfb ↗
Connections (7)
Protein structure databases are phylogenetically biasedAssociation
AlphaFold database is phylogenetically biasedAssociation
Species abundance in AFDB and PDB is highly skewedAssociation
Taxonomic completeness assessed by family-level diversity in AFDBAssociation
Protein ratio measures per-species sampling completenessAssociation
AlphaFold and Foldseek show strong taxonomic concordanceAssociation
AFDB is an imbalanced datasetAssociation