Association·arcadia
Taxonomic completeness in AFDB assessed using TimeTree
Claim that taxonomic completeness in AFDB was assessed by analyzing the ratio of observed and total possible phylogenetic diversity within each phylum using the TimeTree of Life phylogeny.
Confidence
90%
active
Evidence Quote
“We measured how well sampled phyla were in the AFDB using the complete TimeTree of Life phylogeny; taxonomic completeness was assessed by analyzing ratio of observed and total possible phylogenetic diversity within each phylum.”
Relationship
taxonomic completeness assesses TimeTree of Life phylogeny
Connections (3)
Evidence
“Reference to Kumar et al. (2022) describing TimeTree 5, a resource for species divergence times.”
Kumar S et al. (2022). TimeTree 5: An Expanded Resource for Species Divergence Times doi:10.1093/molbev/msac174 ↗
“Evidence summarizing the comprehensive update on curation, resources and tools of NCBI Taxonomy as described in the 2020 publication.”
“Evidence summarizing the ape 5.0 software environment designed for modern phylogenetics and evolutionary analyses in R, as described by Paradis and Schliep (2018).”
(2018). ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R doi:10.1093/bioinformatics/bty633 ↗