Factor·arcadia
sourmash outputs
Text files (JSON and CSV) produced by the sourmash Python package describing sequencing data content and similarity; used in downstream analyses.
Confidence
100%
active
Source
Adair L. Borges et al. (2023). How can sourmash outputs be analyzed in R? doi:10.57844/arcadia-1896-ke33 ↗
Connections (7)
Clustered heatmaps visualize sample similarityAssociation
MDS plot groups similar samples togetherAssociation
sourmash gather provides taxonomic profiles for metagenomesAssociation
Sankey diagrams visualize taxonomic compositionAssociation
Alluvial plots visualize lineage shifts over timeAssociation
sourmashconsumr enables analysis of sourmash outputs in RAssociation
sourmash outputs describe sequencing data similarity and contentAssociation