Association·arcadia
GNNs enable direct phylogenetic tree inference
GNNs (and related architectures) can directly infer phylogenetic trees from sequence data.
Confidence
70%
active
Evidence Quote
“GNNs can directly infer phylogenetic trees from genetic sequence data.”
Relationship
Graph Neural Networks (GNNs) enables PhylogeneticTreeInference
Arguments
Evidence
“Reference to Kelleher J, Wong Y, Wohns AW, Fadil C, Albers PK, McVean G. (2019)”
(2019). Inferring whole-genome histories in large population datasets doi:10.1038/s41588-019-0483-y ↗
“Reference to Sun C et al. (2024) describing DeepDynaForecast and graph deep learning for epidemic forecasting.”
Sun C et al. (2024). DeepDynaForecast: Phylogenetic-informed graph deep learning for epidemic transmission dynamic prediction doi:10.1371/journal.pcbi.1011351 ↗
“Reference to Sun C et al. (2024) describing phylogenetic-informed graph deep learning for transmission cluster classification.”
Sun C et al. (2024). Phylogenetic-informed graph deep learning to classify dynamic transmission clusters in infectious disease epidemics doi:10.1093/bioadv/vbae158 ↗
“Reference to Zhang C. (2023)”
Zhang C (2023). Learnable Topological Features for Phylogenetic Inference via Graph Neural Networks doi:10.48550/ARXIV.2302.08840 ↗