Bioinformatic tool workflow enables phage genome annotation

This chain explains how the combined use of multiple bioinformatic tools (Pharokka, PHANOTATE, tRNAscan-SE, ARAGORN, CRT, MMseqs2) provides a complete workflow for phage genome annotation, improving gene prediction, tRNA/CRISPR detection, and protein sequence analysis. This toolset underpins downstream claims about phage genome structure and function in the paper.

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